Code
library(knitr)
library(targets)
library(MiscMetabar)
library(patchwork)
here::i_am("analysis/01_bioinformatics.qmd")
source(here::here("R/styles.R"))
source(here::here("R/functions.R"))Carbon footprint
Code
res_ga <- greenAlgoR::ga_targets()No local metadata. Did you remember to run tar_meta_download()?
Details: https://books.ropensci.org/targets/cloud-storage.html.
(Or maybe you need to run the pipeline with tar_make()?)
Silence this message with Sys.setenv(TAR_WARN = "false").Code
library("emojifont")
ggvalue_box(
round(res_ga$carbon_footprint_total_gCO2),
"Carbon footprint (g)",
icons = fontawesome(search_fontawesome("industry")[1]),
alpha_icon = 0.7,
colors = idest_pal$ligth_color_idest[[1]][[3]],
color_icon = idest_pal$dark_color_idest[[1]][[5]],
value_font_color = idest_pal$dark_color_idest[[1]][[5]],
lab_font_color = idest_pal$dark_color_idest[[1]][[5]]) +
ggvalue_box(
round(res_ga$energy_needed_kWh,2),
"Energy used (kWh)",
icons = fontawesome(search_fontawesome("bolt")),
alpha_icon = 0.7,
colors = idest_pal$ligth_color_idest[[1]][[1]],
color_icon = idest_pal$dark_color_idest[[1]][[2]],
value_font_color = idest_pal$dark_color_idest[[1]][[2]],
lab_font_color = idest_pal$dark_color_idest[[1]][[2]]) 
Summary of the bioinformatic pipeline
Timeline and cpu usage
Code
log_data <- autometric::log_read(
here::here("data/data_final/autometric_log.txt"),
units_time = "hours",
units_memory = "gigabytes"
)
log_data |>
filter(!grepl("conclude:", phase)) |>
filter(!grepl("prepare:", phase)) |>
filter(!grepl("__DEFAULT__", phase)) |>
ggplot(aes(x = time, y = reorder(phase, desc(time)), color = resident)) +
geom_line(aes(linewidth = cpu)) +
scale_color_viridis_b("Memory (Gb)", end = 0.9, direction = -1) +
theme_idest() +
xlab("Time (in hours)") +
ylab("Targets")Warning in grid.Call(C_stringMetric, as.graphicsAnnot(x$label)): font family
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Code
d_pq <- clean_pq(tar_read("d_vs", store=here::here("_targets/")))Cleaning suppress 3 taxa and 13 samples.Code
summary_plot_pq(d_pq)Cleaning suppress 0 taxa and 0 samples.
Code
tar_glimpse(script=here::here("_targets.R"), targets_only = TRUE, callr_arguments = list(show = FALSE))Code
tar_meta(store=here::here("_targets/"), targets_only = TRUE) |>
dplyr::mutate(time = paste0(seconds %/% 3600,":",seconds %/% 60,":",floor(seconds %% 60)))|>
dplyr::select(name, seconds, bytes, format, time) |>
dplyr::mutate(Gb=round(bytes/10^9,2)) |>
dplyr::arrange(desc(seconds), desc(bytes)) |>
kable()| name | seconds | bytes | format | time | Gb |
|---|---|---|---|---|---|
| tax_tab | 9016.268 | 1409221 | rds | 2:150:16 | 0.00 |
| d_asv | 7343.974 | 1900092 | rds | 2:122:23 | 0.00 |
| ddR | 1214.368 | 119739753 | qs | 0:20:14 | 0.12 |
| ddF | 1097.653 | 106072172 | qs | 0:18:17 | 0.11 |
| quality_raw_seq | 528.616 | 18320 | rds | 0:8:48 | 0.00 |
| filtered | 528.211 | 182 | rds | 0:8:48 | 0.00 |
| quality_seq_wo_primers | 474.257 | 18660 | rds | 0:7:54 | 0.00 |
| cutadapt | 366.159 | 86016 | file | 0:6:6 | 0.00 |
| quality_seq_filtered_trimmed_FW | 234.158 | 11403 | rds | 0:3:54 | 0.00 |
| quality_seq_filtered_trimmed_REV | 231.438 | 11403 | rds | 0:3:51 | 0.00 |
| derep_rs | 172.165 | 1966750496 | qs | 0:2:52 | 1.97 |
| derep_fs | 160.487 | 1133735591 | qs | 0:2:40 | 1.13 |
| err_rs | 118.445 | 20670 | qs | 0:1:58 | 0.00 |
| track_by_samples | 117.299 | 9196 | rds | 0:1:57 | 0.00 |
| merged_seq | 103.936 | 2361929 | qs | 0:1:43 | 0.00 |
| err_fs | 97.837 | 22269 | qs | 0:1:37 | 0.00 |
| bioinfo_report | 57.951 | 44 | rds | 0:0:57 | 0.00 |
| seqtab_wo_chimera | 28.870 | 1399147 | rds | 0:0:28 | 0.00 |
| d_vs | 8.722 | 1521944 | rds | 0:0:8 | 0.00 |
| d_vs_mumu | 5.887 | 1486389 | rds | 0:0:5 | 0.00 |
| seq_tab_Pairs | 0.605 | 1738865 | rds | 0:0:0 | 0.00 |
| d_vs_mumu_rarefy | 0.303 | 1422773 | rds | 0:0:0 | 0.00 |
| data_phyloseq | 0.191 | 1756245 | rds | 0:0:0 | 0.00 |
| s_d | 0.057 | 10856 | rds | 0:0:0 | 0.00 |
| data_raw | 0.038 | 5385 | rds | 0:0:0 | 0.00 |
| track_sequences_samples_clusters | 0.030 | 374 | rds | 0:0:0 | 0.00 |
| seqtab | 0.019 | 1383720 | rds | 0:0:0 | 0.00 |
| asv_tab | 0.016 | 1383563 | rds | 0:0:0 | 0.00 |
| sam_tab | 0.003 | 3487 | rds | 0:0:0 | 0.00 |
| fastq_files_folder | 0.001 | 49152 | file | 0:0:0 | 0.00 |
| file_sam_data_csv | 0.001 | 4376 | file | 0:0:0 | 0.00 |
| file_refseq_taxo | 0.000 | 114270891 | file | 0:0:0 | 0.11 |
| data_fnfs | 0.000 | 2792 | rds | 0:0:0 | 0.00 |
| data_fnrs | 0.000 | 2791 | rds | 0:0:0 | 0.00 |
| samp_n_otu_table | 0.000 | 1855 | rds | 0:0:0 | 0.00 |
Load phyloseq object from targets store
Code
d_pq <- tar_read("d_vs", store=here::here("_targets/"))The {targets} package is at the core of this project. Please read the intro of the user manual if you don’t know {targets}.
The {targets} package store … targets in a folder and can load (tar_load()) and read (tar_read) object from this folder.
Sample data
Code
DT::datatable(d_pq@sam_data)Sequences, samples and clusters across the pipeline
Code
kable(tar_read(track_sequences_samples_clusters, store=here::here("_targets/")))| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| Paired sequences | 13907954 | 23724 | 353 |
| Paired sequences without chimera | 13261466 | 18419 | 353 |
| Paired sequences without chimera and longer than 200bp | 13087221 | 17541 | 353 |
| ASV denoising | 12948177 | 17541 | 352 |
| OTU after vsearch reclustering at 97% | 12948177 | 6691 | 352 |
| OTU vs after mumu cleaning algorithm | 12948177 | 5899 | 339 |
| OTU vs + mumu + rarefaction by sequencing depth | 644000 | 4566 | 322 |
Code
tab_samp <- tar_read(track_by_samples, store=here::here("_targets/"))
for (li in names(tab_samp)) {
print(knitr::kable(tab_samp[[li]], caption = li, format="html"))
cat('\n<!-- -->\n\n')
}| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38193 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 38193 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 38193 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40710 | 219 | 1 |
| OTU after vsearch reclustering at 97% | 40710 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 40710 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46092 | 170 | 1 |
| OTU after vsearch reclustering at 97% | 46092 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 46092 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20287 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 20287 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 20287 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46985 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 46985 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 46985 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44667 | 117 | 1 |
| OTU after vsearch reclustering at 97% | 44667 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 44667 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37759 | 188 | 1 |
| OTU after vsearch reclustering at 97% | 37759 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 37759 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51192 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 51192 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 51192 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44105 | 77 | 1 |
| OTU after vsearch reclustering at 97% | 44105 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 44105 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27876 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 27876 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 27876 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39144 | 77 | 1 |
| OTU after vsearch reclustering at 97% | 39144 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 39144 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42690 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 42690 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 42690 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34126 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 34126 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 34126 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53236 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 53236 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 53236 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 21 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61088 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 61088 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 61088 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41354 | 91 | 1 |
| OTU after vsearch reclustering at 97% | 41354 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 41354 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41202 | 62 | 1 |
| OTU after vsearch reclustering at 97% | 41202 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 41202 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44018 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 44018 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 44018 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46080 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 46080 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 46080 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57315 | 28 | 1 |
| OTU after vsearch reclustering at 97% | 57315 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 57315 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 11 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42282 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 42282 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 42282 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48590 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 48590 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 48590 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36797 | 14 | 1 |
| OTU after vsearch reclustering at 97% | 36797 | 11 | 1 |
| OTU vs after mumu cleaning algorithm | 36797 | 10 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 9 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49922 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 49922 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 49922 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26948 | 33 | 1 |
| OTU after vsearch reclustering at 97% | 26948 | 25 | 1 |
| OTU vs after mumu cleaning algorithm | 26948 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45339 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 45339 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 45339 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 21 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35247 | 62 | 1 |
| OTU after vsearch reclustering at 97% | 35247 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 35247 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39571 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 39571 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 39571 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45270 | 54 | 1 |
| OTU after vsearch reclustering at 97% | 45270 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 45270 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35528 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 35528 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 35528 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41975 | 42 | 1 |
| OTU after vsearch reclustering at 97% | 41975 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 41975 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44049 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 44049 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 44049 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46630 | 40 | 1 |
| OTU after vsearch reclustering at 97% | 46630 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 46630 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44315 | 53 | 1 |
| OTU after vsearch reclustering at 97% | 44315 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 44315 | 24 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38634 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 38634 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 38634 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 23 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40156 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 40156 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 40156 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33857 | 42 | 1 |
| OTU after vsearch reclustering at 97% | 33857 | 25 | 1 |
| OTU vs after mumu cleaning algorithm | 33857 | 24 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33503 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 33503 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 33503 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47136 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 47136 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 47136 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53182 | 151 | 1 |
| OTU after vsearch reclustering at 97% | 53182 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 53182 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27697 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 27697 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 27697 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32634 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 32634 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 32634 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32503 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 32503 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 32503 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33739 | 53 | 1 |
| OTU after vsearch reclustering at 97% | 33739 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 33739 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34142 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 34142 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 34142 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45746 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 45746 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 45746 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35914 | 37 | 1 |
| OTU after vsearch reclustering at 97% | 35914 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 35914 | 16 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 15 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43603 | 34 | 1 |
| OTU after vsearch reclustering at 97% | 43603 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 43603 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 13 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38561 | 47 | 1 |
| OTU after vsearch reclustering at 97% | 38561 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 38561 | 20 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 18 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39259 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 39259 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 39259 | 24 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48325 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 48325 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 48325 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34938 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 34938 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 34938 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 37 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39910 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 39910 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 39910 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 23 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39995 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 39995 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 39995 | 21 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42901 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 42901 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 42901 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46541 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 46541 | 26 | 1 |
| OTU vs after mumu cleaning algorithm | 46541 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 18 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33007 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 33007 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 33007 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39740 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 39740 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 39740 | 19 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39146 | 62 | 1 |
| OTU after vsearch reclustering at 97% | 39146 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 39146 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 21 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 17 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 17 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50214 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 50214 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 50214 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31908 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 31908 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 31908 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21221 | 54 | 1 |
| OTU after vsearch reclustering at 97% | 21221 | 26 | 1 |
| OTU vs after mumu cleaning algorithm | 21221 | 19 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 18 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22643 | 41 | 1 |
| OTU after vsearch reclustering at 97% | 22643 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 22643 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37068 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 37068 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 37068 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25394 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 25394 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 25394 | 32 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35610 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 35610 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 35610 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48730 | 122 | 1 |
| OTU after vsearch reclustering at 97% | 48730 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 48730 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46186 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 46186 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 46186 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27924 | 91 | 1 |
| OTU after vsearch reclustering at 97% | 27924 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 27924 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15215 | 91 | 1 |
| OTU after vsearch reclustering at 97% | 15215 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 15215 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35082 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 35082 | 108 | 1 |
| OTU vs after mumu cleaning algorithm | 35082 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 80 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26511 | 128 | 1 |
| OTU after vsearch reclustering at 97% | 26511 | 114 | 1 |
| OTU vs after mumu cleaning algorithm | 26511 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29257 | 239 | 1 |
| OTU after vsearch reclustering at 97% | 29257 | 219 | 1 |
| OTU vs after mumu cleaning algorithm | 29257 | 214 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 168 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22604 | 142 | 1 |
| OTU after vsearch reclustering at 97% | 22604 | 120 | 1 |
| OTU vs after mumu cleaning algorithm | 22604 | 115 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 92 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2758 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 2758 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 2758 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31556 | 213 | 1 |
| OTU after vsearch reclustering at 97% | 31556 | 187 | 1 |
| OTU vs after mumu cleaning algorithm | 31556 | 181 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 145 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1810 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 1810 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 1810 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1351 | 31 | 1 |
| OTU after vsearch reclustering at 97% | 1351 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 1351 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 139 | 3 | 1 |
| OTU after vsearch reclustering at 97% | 139 | 3 | 1 |
| OTU vs after mumu cleaning algorithm | 139 | 3 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18477 | 148 | 1 |
| OTU after vsearch reclustering at 97% | 18477 | 127 | 1 |
| OTU vs after mumu cleaning algorithm | 18477 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 104 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 191 | 6 | 1 |
| OTU after vsearch reclustering at 97% | 191 | 6 | 1 |
| OTU vs after mumu cleaning algorithm | 191 | 6 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 5755 | 32 | 1 |
| OTU after vsearch reclustering at 97% | 5755 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 5755 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 4487 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 4487 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 4487 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 5320 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 5320 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 5320 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 4295 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 4295 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 4295 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12000 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 12000 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 12000 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28883 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 28883 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 28883 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 892 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 892 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 892 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12916 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 12916 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 12916 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2347 | 41 | 1 |
| OTU after vsearch reclustering at 97% | 2347 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 2347 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9986 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 9986 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 9986 | 92 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15767 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 15767 | 120 | 1 |
| OTU vs after mumu cleaning algorithm | 15767 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15101 | 136 | 1 |
| OTU after vsearch reclustering at 97% | 15101 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 15101 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 112 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2609 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 2609 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 2609 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17410 | 164 | 1 |
| OTU after vsearch reclustering at 97% | 17410 | 152 | 1 |
| OTU vs after mumu cleaning algorithm | 17410 | 147 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15225 | 119 | 1 |
| OTU after vsearch reclustering at 97% | 15225 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 15225 | 116 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24195 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 24195 | 102 | 1 |
| OTU vs after mumu cleaning algorithm | 24195 | 102 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 78 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32731 | 295 | 1 |
| OTU after vsearch reclustering at 97% | 32731 | 266 | 1 |
| OTU vs after mumu cleaning algorithm | 32731 | 251 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 180 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35548 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 35548 | 8 | 1 |
| OTU vs after mumu cleaning algorithm | 35548 | 8 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 7 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 4649 | 5 | 1 |
| OTU after vsearch reclustering at 97% | 4649 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 4649 | 4 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 4 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7499 | 22 | 1 |
| OTU after vsearch reclustering at 97% | 7499 | 18 | 1 |
| OTU vs after mumu cleaning algorithm | 7499 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12891 | 40 | 1 |
| OTU after vsearch reclustering at 97% | 12891 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 12891 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46156 | 28 | 1 |
| OTU after vsearch reclustering at 97% | 46156 | 21 | 1 |
| OTU vs after mumu cleaning algorithm | 46156 | 21 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 19 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18644 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 18644 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 18644 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51887 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 51887 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 51887 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21475 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 21475 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 21475 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29029 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 29029 | 106 | 1 |
| OTU vs after mumu cleaning algorithm | 29029 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46414 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 46414 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 46414 | 22 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19016 | 170 | 1 |
| OTU after vsearch reclustering at 97% | 19016 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 19016 | 145 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 124 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46933 | 34 | 1 |
| OTU after vsearch reclustering at 97% | 46933 | 25 | 1 |
| OTU vs after mumu cleaning algorithm | 46933 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29205 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 29205 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 29205 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53319 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 53319 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 53319 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54529 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 54529 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 54529 | 21 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35088 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 35088 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 35088 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51059 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 51059 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 51059 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9905 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 9905 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 9905 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44678 | 29 | 1 |
| OTU after vsearch reclustering at 97% | 44678 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 44678 | 19 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 11626 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 11626 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 11626 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39590 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 39590 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 39590 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14856 | 92 | 1 |
| OTU after vsearch reclustering at 97% | 14856 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 14856 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42031 | 17 | 1 |
| OTU after vsearch reclustering at 97% | 42031 | 11 | 1 |
| OTU vs after mumu cleaning algorithm | 42031 | 11 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 11 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24164 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 24164 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 24164 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48048 | 41 | 1 |
| OTU after vsearch reclustering at 97% | 48048 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 48048 | 22 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20512 | 116 | 1 |
| OTU after vsearch reclustering at 97% | 20512 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 20512 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 76 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55427 | 47 | 1 |
| OTU after vsearch reclustering at 97% | 55427 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 55427 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18730 | 90 | 1 |
| OTU after vsearch reclustering at 97% | 18730 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 18730 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48051 | 43 | 1 |
| OTU after vsearch reclustering at 97% | 48051 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 48051 | 18 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 18 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22076 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 22076 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 22076 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51908 | 54 | 1 |
| OTU after vsearch reclustering at 97% | 51908 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 51908 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19888 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 19888 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 19888 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25543 | 110 | 1 |
| OTU after vsearch reclustering at 97% | 25543 | 94 | 1 |
| OTU vs after mumu cleaning algorithm | 25543 | 92 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49570 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 49570 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 49570 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24890 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 24890 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 24890 | 108 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 92 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 52669 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 52669 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 52669 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23493 | 128 | 1 |
| OTU after vsearch reclustering at 97% | 23493 | 103 | 1 |
| OTU vs after mumu cleaning algorithm | 23493 | 94 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44597 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 44597 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 44597 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50265 | 25 | 1 |
| OTU after vsearch reclustering at 97% | 50265 | 20 | 1 |
| OTU vs after mumu cleaning algorithm | 50265 | 18 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 18 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31601 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 31601 | 93 | 1 |
| OTU vs after mumu cleaning algorithm | 31601 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 119899 | 527 | 1 |
| OTU after vsearch reclustering at 97% | 119899 | 400 | 1 |
| OTU vs after mumu cleaning algorithm | 119899 | 384 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 220 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 110169 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 110169 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 110169 | 24 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 101688 | 299 | 1 |
| OTU after vsearch reclustering at 97% | 101688 | 169 | 1 |
| OTU vs after mumu cleaning algorithm | 101688 | 164 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 80566 | 342 | 1 |
| OTU after vsearch reclustering at 97% | 80566 | 251 | 1 |
| OTU vs after mumu cleaning algorithm | 80566 | 239 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 143 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 76608 | 245 | 1 |
| OTU after vsearch reclustering at 97% | 76608 | 193 | 1 |
| OTU vs after mumu cleaning algorithm | 76608 | 188 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 119 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 115155 | 411 | 1 |
| OTU after vsearch reclustering at 97% | 115155 | 321 | 1 |
| OTU vs after mumu cleaning algorithm | 115155 | 306 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 171 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 86836 | 255 | 1 |
| OTU after vsearch reclustering at 97% | 86836 | 181 | 1 |
| OTU vs after mumu cleaning algorithm | 86836 | 176 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 157 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 105870 | 506 | 1 |
| OTU after vsearch reclustering at 97% | 105870 | 419 | 1 |
| OTU vs after mumu cleaning algorithm | 105870 | 393 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 191 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 71618 | 433 | 1 |
| OTU after vsearch reclustering at 97% | 71618 | 369 | 1 |
| OTU vs after mumu cleaning algorithm | 71618 | 357 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 216 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 74154 | 442 | 1 |
| OTU after vsearch reclustering at 97% | 74154 | 362 | 1 |
| OTU vs after mumu cleaning algorithm | 74154 | 343 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 200 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 94817 | 405 | 1 |
| OTU after vsearch reclustering at 97% | 94817 | 294 | 1 |
| OTU vs after mumu cleaning algorithm | 94817 | 272 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 165 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 108997 | 273 | 1 |
| OTU after vsearch reclustering at 97% | 108997 | 178 | 1 |
| OTU vs after mumu cleaning algorithm | 108997 | 175 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 147 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 77095 | 445 | 1 |
| OTU after vsearch reclustering at 97% | 77095 | 375 | 1 |
| OTU vs after mumu cleaning algorithm | 77095 | 351 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 199 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 81294 | 375 | 1 |
| OTU after vsearch reclustering at 97% | 81294 | 315 | 1 |
| OTU vs after mumu cleaning algorithm | 81294 | 305 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 196 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61592 | 284 | 1 |
| OTU after vsearch reclustering at 97% | 61592 | 237 | 1 |
| OTU vs after mumu cleaning algorithm | 61592 | 228 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 178 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68842 | 298 | 1 |
| OTU after vsearch reclustering at 97% | 68842 | 228 | 1 |
| OTU vs after mumu cleaning algorithm | 68842 | 220 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 152 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 105346 | 336 | 1 |
| OTU after vsearch reclustering at 97% | 105346 | 245 | 1 |
| OTU vs after mumu cleaning algorithm | 105346 | 236 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 143 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 115312 | 424 | 1 |
| OTU after vsearch reclustering at 97% | 115312 | 378 | 1 |
| OTU vs after mumu cleaning algorithm | 115312 | 357 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 185 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 75820 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 75820 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 75820 | 123 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 117 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46500 | 35 | 1 |
| OTU after vsearch reclustering at 97% | 46500 | 20 | 1 |
| OTU vs after mumu cleaning algorithm | 46500 | 18 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61337 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 61337 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 61337 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 102130 | 462 | 1 |
| OTU after vsearch reclustering at 97% | 102130 | 383 | 1 |
| OTU vs after mumu cleaning algorithm | 102130 | 365 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 269 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 139137 | 328 | 1 |
| OTU after vsearch reclustering at 97% | 139137 | 287 | 1 |
| OTU vs after mumu cleaning algorithm | 139137 | 264 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 150 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 104438 | 512 | 1 |
| OTU after vsearch reclustering at 97% | 104438 | 430 | 1 |
| OTU vs after mumu cleaning algorithm | 104438 | 411 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 215 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 90468 | 301 | 1 |
| OTU after vsearch reclustering at 97% | 90468 | 196 | 1 |
| OTU vs after mumu cleaning algorithm | 90468 | 187 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 159 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 61811 | 329 | 1 |
| OTU after vsearch reclustering at 97% | 61811 | 286 | 1 |
| OTU vs after mumu cleaning algorithm | 61811 | 269 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 185 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 67737 | 355 | 1 |
| OTU after vsearch reclustering at 97% | 67737 | 309 | 1 |
| OTU vs after mumu cleaning algorithm | 67737 | 293 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 210 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41856 | 40 | 1 |
| OTU after vsearch reclustering at 97% | 41856 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 41856 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14967 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 14967 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 14967 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47084 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 47084 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 47084 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12953 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 12953 | 26 | 1 |
| OTU vs after mumu cleaning algorithm | 12953 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36002 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 36002 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 36002 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14637 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 14637 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 14637 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59044 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 59044 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 59044 | 21 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 16639 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 16639 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 16639 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57180 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 57180 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 57180 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23121 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 23121 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 23121 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24677 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 24677 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 24677 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46653 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 46653 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 46653 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28415 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 28415 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 28415 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44797 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 44797 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 44797 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19140 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 19140 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 19140 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25107 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 25107 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 25107 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58560 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 58560 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 58560 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49969 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 49969 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 49969 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33016 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 33016 | 83 | 1 |
| OTU vs after mumu cleaning algorithm | 33016 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49130 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 49130 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 49130 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45662 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 45662 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 45662 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35681 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 35681 | 96 | 1 |
| OTU vs after mumu cleaning algorithm | 35681 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54818 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 54818 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 54818 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9127 | 35 | 1 |
| OTU after vsearch reclustering at 97% | 9127 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 9127 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47667 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 47667 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 47667 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9838 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 9838 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 9838 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54665 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 54665 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 54665 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14998 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 14998 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 14998 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39548 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 39548 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 39548 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19489 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 19489 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 19489 | 72 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50123 | 41 | 1 |
| OTU after vsearch reclustering at 97% | 50123 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 50123 | 21 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 21 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25589 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 25589 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 25589 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 76 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58124 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 58124 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 58124 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23320 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 23320 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 23320 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23043 | 139 | 1 |
| OTU after vsearch reclustering at 97% | 23043 | 107 | 1 |
| OTU vs after mumu cleaning algorithm | 23043 | 106 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 11569 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 11569 | 121 | 1 |
| OTU vs after mumu cleaning algorithm | 11569 | 117 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 102 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2652 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 2652 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 2652 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 72 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32691 | 216 | 1 |
| OTU after vsearch reclustering at 97% | 32691 | 188 | 1 |
| OTU vs after mumu cleaning algorithm | 32691 | 183 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 125 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24603 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 24603 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 24603 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7209 | 146 | 1 |
| OTU after vsearch reclustering at 97% | 7209 | 138 | 1 |
| OTU vs after mumu cleaning algorithm | 7209 | 134 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 6191 | 28 | 1 |
| OTU after vsearch reclustering at 97% | 6191 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 6191 | 22 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12411 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 12411 | 93 | 1 |
| OTU vs after mumu cleaning algorithm | 12411 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35143 | 234 | 1 |
| OTU after vsearch reclustering at 97% | 35143 | 173 | 1 |
| OTU vs after mumu cleaning algorithm | 35143 | 165 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27668 | 193 | 1 |
| OTU after vsearch reclustering at 97% | 27668 | 155 | 1 |
| OTU vs after mumu cleaning algorithm | 27668 | 152 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 120 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23336 | 233 | 1 |
| OTU after vsearch reclustering at 97% | 23336 | 215 | 1 |
| OTU vs after mumu cleaning algorithm | 23336 | 210 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 167 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26636 | 226 | 1 |
| OTU after vsearch reclustering at 97% | 26636 | 202 | 1 |
| OTU vs after mumu cleaning algorithm | 26636 | 201 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 151 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34746 | 330 | 1 |
| OTU after vsearch reclustering at 97% | 34746 | 292 | 1 |
| OTU vs after mumu cleaning algorithm | 34746 | 286 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 216 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 8736 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 8736 | 154 | 1 |
| OTU vs after mumu cleaning algorithm | 8736 | 150 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 148 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2301 | 23 | 1 |
| OTU after vsearch reclustering at 97% | 2301 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 2301 | 22 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 21 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 201 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 201 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 201 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 13698 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 13698 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 13698 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 584 | 7 | 1 |
| OTU after vsearch reclustering at 97% | 584 | 7 | 1 |
| OTU vs after mumu cleaning algorithm | 584 | 7 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 10930 | 137 | 1 |
| OTU after vsearch reclustering at 97% | 10930 | 129 | 1 |
| OTU vs after mumu cleaning algorithm | 10930 | 127 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 192 | 8 | 1 |
| OTU after vsearch reclustering at 97% | 192 | 8 | 1 |
| OTU vs after mumu cleaning algorithm | 192 | 8 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1392 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 1392 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 1392 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 17541 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 6691 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 4420 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 4420 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 4420 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42129 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 42129 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 42129 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 7 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 7 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 4224 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 4224 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 4224 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1027 | 18 | 1 |
| OTU after vsearch reclustering at 97% | 1027 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 1027 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26249 | 167 | 1 |
| OTU after vsearch reclustering at 97% | 26249 | 153 | 1 |
| OTU vs after mumu cleaning algorithm | 26249 | 153 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 126 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27569 | 146 | 1 |
| OTU after vsearch reclustering at 97% | 27569 | 126 | 1 |
| OTU vs after mumu cleaning algorithm | 27569 | 123 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 99 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 563 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 563 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 563 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1009 | 21 | 1 |
| OTU after vsearch reclustering at 97% | 1009 | 20 | 1 |
| OTU vs after mumu cleaning algorithm | 1009 | 20 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35740 | 161 | 1 |
| OTU after vsearch reclustering at 97% | 35740 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 35740 | 107 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34237 | 247 | 1 |
| OTU after vsearch reclustering at 97% | 34237 | 225 | 1 |
| OTU vs after mumu cleaning algorithm | 34237 | 214 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 171 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30016 | 151 | 1 |
| OTU after vsearch reclustering at 97% | 30016 | 133 | 1 |
| OTU vs after mumu cleaning algorithm | 30016 | 127 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 3037 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 3037 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 3037 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27271 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 27271 | 104 | 1 |
| OTU vs after mumu cleaning algorithm | 27271 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7368 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 7368 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 7368 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21727 | 141 | 1 |
| OTU after vsearch reclustering at 97% | 21727 | 124 | 1 |
| OTU vs after mumu cleaning algorithm | 21727 | 121 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12861 | 186 | 1 |
| OTU after vsearch reclustering at 97% | 12861 | 173 | 1 |
| OTU vs after mumu cleaning algorithm | 12861 | 171 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 146 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14731 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 14731 | 102 | 1 |
| OTU vs after mumu cleaning algorithm | 14731 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 78 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30822 | 245 | 1 |
| OTU after vsearch reclustering at 97% | 30822 | 211 | 1 |
| OTU vs after mumu cleaning algorithm | 30822 | 205 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 139 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40719 | 258 | 1 |
| OTU after vsearch reclustering at 97% | 40719 | 220 | 1 |
| OTU vs after mumu cleaning algorithm | 40719 | 211 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 146 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50429 | 209 | 1 |
| OTU after vsearch reclustering at 97% | 50429 | 163 | 1 |
| OTU vs after mumu cleaning algorithm | 50429 | 159 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 115 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 66513 | 218 | 1 |
| OTU after vsearch reclustering at 97% | 66513 | 164 | 1 |
| OTU vs after mumu cleaning algorithm | 66513 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59829 | 182 | 1 |
| OTU after vsearch reclustering at 97% | 59829 | 135 | 1 |
| OTU vs after mumu cleaning algorithm | 59829 | 132 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 66252 | 281 | 1 |
| OTU after vsearch reclustering at 97% | 66252 | 225 | 1 |
| OTU vs after mumu cleaning algorithm | 66252 | 212 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 130 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27245 | 297 | 1 |
| OTU after vsearch reclustering at 97% | 27245 | 278 | 1 |
| OTU vs after mumu cleaning algorithm | 27245 | 269 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 206 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33970 | 242 | 1 |
| OTU after vsearch reclustering at 97% | 33970 | 227 | 1 |
| OTU vs after mumu cleaning algorithm | 33970 | 219 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 159 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 59358 | 192 | 1 |
| OTU after vsearch reclustering at 97% | 59358 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 59358 | 127 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50123 | 270 | 1 |
| OTU after vsearch reclustering at 97% | 50123 | 215 | 1 |
| OTU vs after mumu cleaning algorithm | 50123 | 209 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 136 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29536 | 232 | 1 |
| OTU after vsearch reclustering at 97% | 29536 | 213 | 1 |
| OTU vs after mumu cleaning algorithm | 29536 | 211 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 164 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58989 | 325 | 1 |
| OTU after vsearch reclustering at 97% | 58989 | 252 | 1 |
| OTU vs after mumu cleaning algorithm | 58989 | 241 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 150 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 122494 | 149 | 1 |
| OTU after vsearch reclustering at 97% | 122494 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 122494 | 85 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 157913 | 159 | 1 |
| OTU after vsearch reclustering at 97% | 157913 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 157913 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 81961 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 81961 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 81961 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 70625 | 212 | 1 |
| OTU after vsearch reclustering at 97% | 70625 | 147 | 1 |
| OTU vs after mumu cleaning algorithm | 70625 | 134 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 116 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 68975 | 436 | 1 |
| OTU after vsearch reclustering at 97% | 68975 | 377 | 1 |
| OTU vs after mumu cleaning algorithm | 68975 | 368 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 248 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 111272 | 474 | 1 |
| OTU after vsearch reclustering at 97% | 111272 | 359 | 1 |
| OTU vs after mumu cleaning algorithm | 111272 | 336 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 172 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 92696 | 393 | 1 |
| OTU after vsearch reclustering at 97% | 92696 | 233 | 1 |
| OTU vs after mumu cleaning algorithm | 92696 | 224 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 131 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 137903 | 531 | 1 |
| OTU after vsearch reclustering at 97% | 137903 | 449 | 1 |
| OTU vs after mumu cleaning algorithm | 137903 | 418 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 209 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 95131 | 541 | 1 |
| OTU after vsearch reclustering at 97% | 95131 | 440 | 1 |
| OTU vs after mumu cleaning algorithm | 95131 | 419 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 256 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 104314 | 340 | 1 |
| OTU after vsearch reclustering at 97% | 104314 | 245 | 1 |
| OTU vs after mumu cleaning algorithm | 104314 | 234 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 63723 | 280 | 1 |
| OTU after vsearch reclustering at 97% | 63723 | 202 | 1 |
| OTU vs after mumu cleaning algorithm | 63723 | 198 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 135 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51138 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 51138 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 51138 | 18 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40472 | 155 | 1 |
| OTU after vsearch reclustering at 97% | 40472 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 40472 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37542 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 37542 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 37542 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41529 | 28 | 1 |
| OTU after vsearch reclustering at 97% | 41529 | 22 | 1 |
| OTU vs after mumu cleaning algorithm | 41529 | 22 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 19 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36212 | 210 | 1 |
| OTU after vsearch reclustering at 97% | 36212 | 170 | 1 |
| OTU vs after mumu cleaning algorithm | 36212 | 164 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33845 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 33845 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 33845 | 83 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 58579 | 91 | 1 |
| OTU after vsearch reclustering at 97% | 58579 | 37 | 1 |
| OTU vs after mumu cleaning algorithm | 58579 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31029 | 140 | 1 |
| OTU after vsearch reclustering at 97% | 31029 | 129 | 1 |
| OTU vs after mumu cleaning algorithm | 31029 | 127 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 109 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38305 | 168 | 1 |
| OTU after vsearch reclustering at 97% | 38305 | 122 | 1 |
| OTU vs after mumu cleaning algorithm | 38305 | 119 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54794 | 41 | 1 |
| OTU after vsearch reclustering at 97% | 54794 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 54794 | 13 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 13 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 13952 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 13952 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 13952 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32230 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 32230 | 95 | 1 |
| OTU vs after mumu cleaning algorithm | 32230 | 93 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43259 | 35 | 1 |
| OTU after vsearch reclustering at 97% | 43259 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 43259 | 19 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 19 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 16302 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 16302 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 16302 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31721 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 31721 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 31721 | 83 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46102 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 46102 | 19 | 1 |
| OTU vs after mumu cleaning algorithm | 46102 | 19 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 19 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19365 | 110 | 1 |
| OTU after vsearch reclustering at 97% | 19365 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 19365 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27148 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 27148 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 27148 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37339 | 29 | 1 |
| OTU after vsearch reclustering at 97% | 37339 | 24 | 1 |
| OTU vs after mumu cleaning algorithm | 37339 | 24 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 12904 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 12904 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 12904 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29386 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 29386 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 29386 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55272 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 55272 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 55272 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 11163 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 11163 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 11163 | 28 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40955 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 40955 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 40955 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47311 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 47311 | 24 | 1 |
| OTU vs after mumu cleaning algorithm | 47311 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 23 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9797 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 9797 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 9797 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 5916 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 5916 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 5916 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55598 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 55598 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 55598 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21241 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 21241 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 21241 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20176 | 60 | 1 |
| OTU after vsearch reclustering at 97% | 20176 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 20176 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50310 | 35 | 1 |
| OTU after vsearch reclustering at 97% | 50310 | 20 | 1 |
| OTU vs after mumu cleaning algorithm | 50310 | 20 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15998 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 15998 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 15998 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24372 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 24372 | 97 | 1 |
| OTU vs after mumu cleaning algorithm | 24372 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 89 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43886 | 62 | 1 |
| OTU after vsearch reclustering at 97% | 43886 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 43886 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19140 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 19140 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 19140 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24975 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 24975 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 24975 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 89 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 53997 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 53997 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 53997 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30659 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 30659 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 30659 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33104 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 33104 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 33104 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50821 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 50821 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 50821 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40546 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 40546 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 40546 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34461 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 34461 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 34461 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54575 | 53 | 1 |
| OTU after vsearch reclustering at 97% | 54575 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 54575 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41156 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 41156 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 41156 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31887 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 31887 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 31887 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46158 | 38 | 1 |
| OTU after vsearch reclustering at 97% | 46158 | 18 | 1 |
| OTU vs after mumu cleaning algorithm | 46158 | 16 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 15 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28805 | 53 | 1 |
| OTU after vsearch reclustering at 97% | 28805 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 28805 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33368 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 33368 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 33368 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42104 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 42104 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 42104 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34014 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 34014 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 34014 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34730 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 34730 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 34730 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 57877 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 57877 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 57877 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37031 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 37031 | 101 | 1 |
| OTU vs after mumu cleaning algorithm | 37031 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 88 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29807 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 29807 | 103 | 1 |
| OTU vs after mumu cleaning algorithm | 29807 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48399 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 48399 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 48399 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 2 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 2 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33486 | 203 | 1 |
| OTU after vsearch reclustering at 97% | 33486 | 164 | 1 |
| OTU vs after mumu cleaning algorithm | 33486 | 159 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 113 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50048 | 36 | 1 |
| OTU after vsearch reclustering at 97% | 50048 | 20 | 1 |
| OTU vs after mumu cleaning algorithm | 50048 | 19 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25496 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 25496 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 25496 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31300 | 145 | 1 |
| OTU after vsearch reclustering at 97% | 31300 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 31300 | 122 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24271 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 24271 | 28 | 1 |
| OTU vs after mumu cleaning algorithm | 24271 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 9 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 9 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56220 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 56220 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 56220 | 32 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 241 | 18 | 1 |
| OTU after vsearch reclustering at 97% | 241 | 18 | 1 |
| OTU vs after mumu cleaning algorithm | 241 | 18 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 62074 | 60 | 1 |
| OTU after vsearch reclustering at 97% | 62074 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 62074 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 13861 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 13861 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 13861 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18840 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 18840 | 110 | 1 |
| OTU vs after mumu cleaning algorithm | 18840 | 107 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 50634 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 50634 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 50634 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20510 | 60 | 1 |
| OTU after vsearch reclustering at 97% | 20510 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 20510 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25284 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 25284 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 25284 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49982 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 49982 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 49982 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 11468 | 119 | 1 |
| OTU after vsearch reclustering at 97% | 11468 | 110 | 1 |
| OTU vs after mumu cleaning algorithm | 11468 | 109 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 100 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51483 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 51483 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 51483 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 13782 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 13782 | 103 | 1 |
| OTU vs after mumu cleaning algorithm | 13782 | 98 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 89 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23628 | 109 | 1 |
| OTU after vsearch reclustering at 97% | 23628 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 23628 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 69 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55525 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 55525 | 25 | 1 |
| OTU vs after mumu cleaning algorithm | 55525 | 25 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14935 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 14935 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 14935 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
Session Information
Session information are detailed below. More information about the machine, the system, as well as python and R packages, are available in the file data_final/information_run.txt .
Code
sessionInfo()R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Debian GNU/Linux 12 (bookworm)
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.11.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Paris
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] emojifont_0.5.5 patchwork_1.3.0 MiscMetabar_0.10.1 purrr_1.0.2
[5] dplyr_1.1.4 dada2_1.34.0 Rcpp_1.0.13-1 ggplot2_3.5.1
[9] phyloseq_1.50.0 targets_1.9.0 knitr_1.49
loaded via a namespace (and not attached):
[1] RColorBrewer_1.1-3 jsonlite_1.8.9
[3] magrittr_2.0.3 farver_2.1.2
[5] rmarkdown_2.29 zlibbioc_1.52.0
[7] vctrs_0.6.5 multtest_2.62.0
[9] Rsamtools_2.22.0 benchmarkme_1.0.8
[11] htmltools_0.5.8.1 S4Arrays_1.6.0
[13] Rhdf5lib_1.28.0 SparseArray_1.6.0
[15] rhdf5_2.50.0 sass_0.4.9
[17] bslib_0.8.0 htmlwidgets_1.6.4
[19] plyr_1.8.9 cachem_1.1.0
[21] GenomicAlignments_1.42.0 igraph_2.1.1
[23] lifecycle_1.0.4 iterators_1.0.14
[25] pkgconfig_2.0.3 Matrix_1.7-1
[27] R6_2.5.1 fastmap_1.2.0
[29] GenomeInfoDbData_1.2.13 MatrixGenerics_1.18.0
[31] digest_0.6.37 showtext_0.9-7
[33] colorspace_2.1-1 ShortRead_1.64.0
[35] S4Vectors_0.44.0 ps_1.8.1
[37] rprojroot_2.0.4 crosstalk_1.2.1
[39] GenomicRanges_1.58.0 base64url_1.4
[41] hwriter_1.3.2.1 vegan_2.6-8
[43] labeling_0.4.3 fansi_1.0.6
[45] httr_1.4.7 abind_1.4-8
[47] mgcv_1.9-1 compiler_4.4.2
[49] here_1.0.1 withr_3.0.2
[51] doParallel_1.0.17 backports_1.5.0
[53] BiocParallel_1.40.0 MASS_7.3-61
[55] DelayedArray_0.32.0 biomformat_1.34.0
[57] permute_0.9-7 tools_4.4.2
[59] ape_5.8 glue_1.8.0
[61] callr_3.7.6 nlme_3.1-166
[63] rhdf5filters_1.18.0 grid_4.4.2
[65] cluster_2.1.6 reshape2_1.4.4
[67] ade4_1.7-22 generics_0.1.3
[69] gtable_0.3.6 data.table_1.16.2
[71] utf8_1.2.4 XVector_0.46.0
[73] BiocGenerics_0.52.0 foreach_1.5.2
[75] pillar_1.9.0 stringr_1.5.1
[77] benchmarkmeData_1.0.4 splines_4.4.2
[79] lattice_0.22-6 showtextdb_3.0
[81] renv_1.0.11 survival_3.7-0
[83] deldir_2.0-4 tidyselect_1.2.1
[85] Biostrings_2.74.0 IRanges_2.40.0
[87] SummarizedExperiment_1.36.0 stats4_4.4.2
[89] xfun_0.49 Biobase_2.66.0
[91] matrixStats_1.4.1 DT_0.33
[93] proto_1.0.0 visNetwork_2.1.2
[95] stringi_1.8.4 UCSC.utils_1.2.0
[97] yaml_2.3.10 evaluate_1.0.1
[99] codetools_0.2-20 interp_1.1-6
[101] tibble_3.2.1 autometric_0.1.2
[103] BiocManager_1.30.25 cli_3.6.3
[105] RcppParallel_5.1.9 secretbase_1.0.3
[107] jquerylib_0.1.4 munsell_0.5.1
[109] processx_3.8.4 GenomeInfoDb_1.42.0
[111] greenAlgoR_0.1.1 png_0.1-8
[113] parallel_4.4.2 latticeExtra_0.6-30
[115] jpeg_0.1-10 bitops_1.0-9
[117] pwalign_1.2.0 viridisLite_0.4.2
[119] scales_1.3.0 sysfonts_0.8.9
[121] crayon_1.5.3 rlang_1.1.4 Citation
BibTeX citation:
@online{taudière2024,
author = {Taudière, Adrien},
title = {Bioinformatics Pipeline Summary},
date = {2024-11-26},
langid = {en}
}
For attribution, please cite this work as:
Taudière, Adrien. 2024. “Bioinformatics Pipeline Summary.”
November 26, 2024.